| Session | Date/Time | Location | Title | Type | Authors | Keywords |
Tuesday, August 3rd · 8:45 am to 12:45 pm · Alpine A (Snowbird Center)
Session 31: Colloquium: Methods and theory of phylogenetic Inference, Part I
Presider: Mark P. Simmons, Colorado State University |
| 31-1 | August 3rd
8:45 am | Alpine A (Snowbird Center) | Methods and theory of phylogenetic inference | Symposium | Kelchner, Scot A., Simmons, Mark P.. | |
| 31-2 | August 3rd
9:00 am | Alpine A (Snowbird Center) | Incongruence around the species level: Is the glass half full or half empty? | Symposium | Doyle, Jeff J.. | incongruence
gene tree/species tree
tokogeny |
| 31-3 | August 3rd
9:30 am | Alpine A (Snowbird Center) | Estimating speciation and extinction rates from phylogenetic trees: A Markov chain Monte Carlo approach | Symposium | Salamin, Nicolas. | birth and death
speciation and extinction rates
Markov chain Monte Carlo
importance sampling
macroevolution
phylogenetics |
| 31-4 | August 3rd
10:00 am | Alpine A (Snowbird Center) | Dead Green: Conceptual and Empirical Perspectives on Integrating Fossils and Extant Taxa in Phylogenetic Analysis | Symposium | Soltis, Pamela S., Manos, Paul S., Manchester, Steven R., Bell, Charles, Soltis, Douglas E.. | divergence time estimates
fossils
phylogeny reconstruction
missing data |
| August 3rd
10:30 am | Alpine A (Snowbird Center) | Break | | | |
| 31-5 | August 3rd
10:45 am | Alpine A (Snowbird Center) | The use of ESTs in phylogenetic analyses
| Symposium | Soltis, Douglas E., Soltis, Pamela S., Albert, Victor A., Kim, Sangtae. | expressed sequence tags
phylogeny reconstruction
genomic resources |
| 31-6 | August 3rd
11:15 am | Alpine A (Snowbird Center) | Resampling branch support strategies: balancing accuracy and effort | Symposium | Freudenstein, John. | branch support
cladistic analysis
jackknife |
| 31-7 | August 3rd
11:45 am | Alpine A (Snowbird Center) | The influence of flat topological priors on Bayesian inference of phylogenetics | Symposium | Randle, Christopher P., Pickett, Kurt M.. | Bayesian phylogenetics
bootstrap
jackknife
clade posterior probability
prior probability |
| 31-8 | August 3rd
12:15 pm | Alpine A (Snowbird Center) | Parsimony vs. Bayesian likelihood for phylogenetic inference from heterogeneous datasets | Symposium | Simmons, Mark P., Zhang, Li-Bing, Webb, Colleen T., Reeves, Aaron, Miller, Jeremy A.. | rate heterogeneity
phylogenetic inference
Bayesian likelihood
parsimony
branch support
simulations |
Tuesday, August 3rd · 2:30 pm to 5:45 pm · Alpine A (Snowbird Center)
Session 39: Colloquium: Methods and theory of phylogenetic Inference, Part II
Presider: Scot A. Kelchner, Australian National University |
| 39-1 | August 3rd
2:30 pm | Alpine A (Snowbird Center) | (Mis)rooting phylogenetic trees | Symposium | Graham, Sean W.. | trees
phylogenetic inference
systematic error
long-branch attraction
rooting
Tree of Life
outgroup
ingroup
root node |
| 39-2 | August 3rd
3:00 pm | Alpine A (Snowbird Center) | Evaluating partitioned models for phylogenetic analysis of combined data. | Symposium | Kelchner, Scot A., Swofford, David L., Wilgenbusch, James. | phylogenetic inference
systematic error
simulation
outgroup rooting
partitioned models
combined data |
| August 3rd
3:30 pm | Alpine A (Snowbird Center) | Break | | | |
| 39-3 | August 3rd
3:45 pm | Alpine A (Snowbird Center) | The utility of whole chloroplast genome sequencing for reconstructing deep nodes in plants with an example from basal angiosperms | Symposium | Jansen, Robert K., dePamphilis, Claude W., Raubeson, Linda, Leebens-Mack, James, McNeal, Joel R., Cui, Liying, Zhang, Yan, Wyman, Stacia, Boore, Jeffrey, Kuehl, Jennifer. | Amborella
basal angiosperms
chloroplast DNA
comparative genomics
genomics
phylogenetics
seed plants |
| 39-4 | August 3rd
4:15 pm | Alpine A (Snowbird Center) | The limits of conventional cladistic analysis - the 500-terminal rbcL matrix, sources of variation in the estimation of branch support, and some gentle criticisms of supertree methods | Symposium | Davis, Jerrold I., Nixon, Kevin C., Little, Damon P.. | rbcL
cladistic analysis
supertree
zilla
bootstrap
jackknife |
| 39-5 | August 3rd
4:45 pm | Alpine A (Snowbird Center) | King Kong versus Godzilla: supertree and supermatrix phylogenetics | Symposium | Sanderson, MJ, Driskell, Amy. | genomics
supertree
supermatrix
database mining |
